Ah, sorry, re-reading the original post I see that the report is only for a single setting.
I was interested in trying v1.2.2.0 on my Win 7 64 bit setup but wasn't going to bother if it couldn't save (any) settings.
Is the suppress the 'cannot skip past end of show' message setting still the below reg key?
HKLM\Software\DVRMSToolbox\CommercialSkip, SuppressSkipDialog = 1